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Genomics
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Genomics
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Genomics
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Robust and Stable Gene Selection via Maximum-Minimum Correntropy Criterion

Authors: Mohammadi, Majid; Sharifi Noghabi, Hossein; Hodtani, Ghosheh Abed; Rajabi Mashhadi, Habib;

Robust and Stable Gene Selection via Maximum-Minimum Correntropy Criterion

Abstract

Abstract One of the central challenges in cancer research is identifying significant genes among thousands of others on a microarray. Since preventing outbreak and progression of cancer is the ultimate goal in bioinformatics and computational biology, detection of genes that are most involved is vital and crucial. In this article, we propose a Maximum-Minimum Correntropy Criterion (MMCC) approach for selection of biologically meaningful genes from microarray data sets which is stable, fast and robust against diverse noise and outliers and competitively accurate in comparison with other algorithms. Moreover, via an evolutionary optimization process, the optimal number of features for each data set is determined. Through broad experimental evaluation, MMCC is proved to be significantly better compared to other well-known gene selection algorithms for 25 commonly used microarray data sets. Surprisingly, high accuracy in classification by Support Vector Machine (SVM) is achieved by less than10 genes selected by MMCC in all of the cases.

Related Organizations
Keywords

Support Vector Machine, Gene Expression Profiling, Neoplasms, Computational Biology, Humans, Genetic Predisposition to Disease, Algorithms, Pattern Recognition, Automated

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
35
Top 10%
Top 10%
Top 10%
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