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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Philosophical Transa...arrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences
Article . 2009 . Peer-reviewed
License: Royal Society Data Sharing and Accessibility
Data sources: Crossref
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
zbMATH Open
Article . 2009
Data sources: zbMATH Open
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Dependence of the period on the rate of protein degradation in minimal models for circadian oscillations

Authors: Gérard, Claude; Gonze, Didier; Goldbeter, Albert;

Dependence of the period on the rate of protein degradation in minimal models for circadian oscillations

Abstract

Circadian rhythms, which occur spontaneously with a period of about 24 h in a variety of organisms, allow their adaptation to the periodic variations of the environment. These rhythms are generated by a genetic regulatory network involving a negative feedback loop on transcription. Mathematical models based on the negative autoregulation of gene expression by the protein product of a clock gene account for the occurrence of self-sustained circadian oscillations. These models differ by their degree of complexity and, hence, by the number of variables considered. Some of these models can be considered as minimal because they contain a reduced number of biochemical processes and variables capable of producing sustained oscillations. In three of these minimal models, the period of the oscillations significantly changes with the rate of degradation of the clock protein. However, depending on the model considered, the period increases, decreases or passes through a maximum as a function of the protein degradation rate. We clarify the bases for these markedly different results by bringing to light the roles of (i) protein phosphorylation, which is required for protein degradation, and (ii) the velocity and degree of saturation of mRNA and protein degradation. Changes in the parameter values of the more complex of the minimal models can produce the period profiles observed in the other two models. The analysis allows us to reconcile the contradictory predictions for the dependence of the period on the clock protein degradation rate in three minimal models used to describe circadian rhythms.

Country
Belgium
Related Organizations
Keywords

Transcription, Genetic, Physiological, Circadian Rhythm -- genetics, Drosophila Proteins -- metabolism, Period Circadian Proteins -- genetics, Messenger -- genetics, circadian clocks, Models, Biological, Feedback, Circadian clocks, Genetic, Models, PER phosphorylation, Chimie, Animals, Drosophila Proteins, RNA, Messenger, Phosphorylation, Drosophila melanogaster -- metabolism, Biological rhythms, Feedback, Physiological, Period Circadian Proteins -- metabolism, Computational model, Drosophila Proteins -- genetics, Period Circadian Proteins, Biological, Minimal model, Drosophila melanogaster -- genetics, Dynamical systems in biology, minimal model, Circadian Rhythm, Messenger -- metabolism, Circadian Rhythm -- physiology, computational model, Kinetics, Time series, auto-correlation, regression, etc. in statistics (GARCH), biological rhythms, Drosophila melanogaster, RNA, Time series analysis of dynamical systems, Transcription

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
30
Average
Top 10%
Top 10%
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