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Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential

Authors: Rack, Johannes Gregor Matthias; Zorzini, Valentina; Zhu, Zihan; Schuller, Marion; Ahel, Dragana; Ahel, Ivan;

Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential

Abstract

Viral macrodomains possess the ability to counteract host ADP-ribosylation, a post-translational modification implicated in the creation of an antiviral environment via immune response regulation. This brought them into focus as promising therapeutic targets, albeit the close homology to some of the human macrodomains raised concerns regarding potential cross-reactivity and adverse effects for the host. Here, we evaluate the structure and function of the macrodomain of SARS-CoV-2, the causative agent of COVID-19. We show that it can antagonize ADP-ribosylation by PARP14, a cellular (ADP-ribosyl)transferase necessary for the restriction of coronaviral infections. Furthermore, our structural studies together with ligand modelling revealed the structural basis for poly(ADP-ribose) binding and hydrolysis, an emerging new aspect of viral macrodomain biology. These new insights were used in an extensive evolutionary analysis aimed at evaluating the druggability of viral macrodomains not only from the Coronaviridae but also Togaviridae and Iridoviridae genera (causing diseases such as Chikungunya and infectious spleen and kidney necrosis virus disease, respectively). We found that they contain conserved features, distinct from their human counterparts, which may be exploited during drug design.

Countries
United Kingdom, Belgium
Keywords

MACRO DOMAIN, Biochemistry & Molecular Biology, REVERSIBLE ADP-RIBOSYLATION, QH301-705.5, Immunology, X domain, INHIBITION, NSP3, coronavirus, Viral Nonstructural Proteins, 0601 Biochemistry and Cell Biology, x domain, General Biochemistry, Genetics and Molecular Biology, non-structural protein 3, Evolution, Molecular, ADP-Ribosylation, RESPIRATORY SYNDROME CORONAVIRUS, Protein Domains, antiviral poly(adp-ribosyl)polymerases, alphavirus, Humans, Biology (General), Adenosine Diphosphate Ribose, Science & Technology, Binding Sites, antiviral poly(ADP-ribosyl)polymerases, CHIKUNGUNYA VIRUS, General Neuroscience, 31 Biological sciences, Research, 32 Biomedical and clinical sciences, RNA-Dependent RNA Polymerase, Recombinant Proteins, Molecular Docking Simulation, ALPHAVIRUS, 1107 Immunology, REPLICATION, (ADP-ribosyl)hydrolase, RNA, HOST-RANGE, Poly(ADP-ribose) Polymerases, Life Sciences & Biomedicine, (adp-ribosyl)hydrolase, 0605 Microbiology, Protein Binding

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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    82
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
82
Top 1%
Top 10%
Top 1%
Green
gold