
pmid: 12118412
In the analysis of sequence-based data matrices, the use of different methods of treating gaps has been demonstrated to in? fluence the resulting phylogenetic hypothe? ses (e.g., Eernisse and Kluge, 1993; Vogler and DeSalle, 1994; Simons and Mayden, 1997). Despite this influence, a well-justi? fied, uniformly applied method of treating gaps is lacking in sequence-based phyloge? netic studies. Treatment of gaps varies widely from secondarily mapping gaps onto the tree inferred from base characters
Base Sequence, Decision Trees, Proteins, Reproducibility of Results, Amino Acid Sequence, DNA, Phylogeny
Base Sequence, Decision Trees, Proteins, Reproducibility of Results, Amino Acid Sequence, DNA, Phylogeny
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