Abstract We show that H I clouds in the Magellanic Clouds are stripped by the ram-pressure due to the halo and disk gases of the Galaxy. Molecular clouds are swept to the edge of the LMC, showing an eccentric distribution. The stripped HI clouds form a narrow band on the sky, and mimics the Magellanic Stream, when the LMC takes a polar orbit. We show that the Magellanic Stream will fall into the Galaxy, and will be finally accreted by the Galactic disk. The accretion may cause warping of the inner gas disk of the Galaxy. Some clouds are accreted by the nuclear disk, which could explain the peculiar distribution and kinematics in the central region. The stripping of the interstellar gas from the Magellanic Clouds will rapidly change their morphological type into dwarf ellipticals.