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Nucleic Acids Research
Article . 2017 . Peer-reviewed
License: CC BY NC
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Nucleic Acids Research
Article
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Article . 2017
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DNA editing in DNA/RNA hybrids by adenosine deaminases that act on RNA

Authors: Zheng, Yuxuan; Lorenzo, Claire; Beal, Peter A;

DNA editing in DNA/RNA hybrids by adenosine deaminases that act on RNA

Abstract

Adenosine deaminases that act on RNA (ADARs) carry out adenosine (A) to inosine (I) editing reactions with a known requirement for duplex RNA. Here, we show that ADARs also react with DNA/RNA hybrid duplexes. Hybrid substrates are deaminated efficiently by ADAR deaminase domains at dA-C mismatches and with E to Q mutations in the base flipping loop of the enzyme. For a long, perfectly matched hybrid, deamination is more efficient with full length ADAR2 than its isolated deaminase domain. Guide RNA strands for directed DNA editing by ADAR were used to target six different 2΄-deoxyadenosines in the M13 bacteriophage ssDNA genome. DNA editing efficiencies varied depending on the sequence context of the editing site consistent with known sequence preferences for ADARs. These observations suggest the reaction within DNA/RNA hybrids may be a natural function of human ADARs. In addition, this work sets the stage for development of a new class of genome editing tools based on directed deamination of 2΄-deoxyadenosines in DNA/RNA hybrids.

Country
United States
Keywords

570, Adenosine Deaminase, Base Pair Mismatch, Bioinformatics and Computational Biology, DNA, Single-Stranded, Genome, Viral, Protein Domains, Single-Stranded, Information and Computing Sciences, Genetics, Humans, Viral, Genome, Deoxyadenosines, Nucleic Acid Enzymes, RNA-Binding Proteins, DNA, Biological Sciences, 540, Environmental sciences, Biological sciences, Chemical sciences, Deamination, RNA, Generic health relevance, Environmental Sciences, Developmental Biology, Bacteriophage M13

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
57
Top 1%
Top 10%
Top 1%
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