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Nucleic Acids Research
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Nucleic Acids Research
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Mechanism of DNA loading by the DNA repair helicase XPD

Authors: Constantinescu-Aruxandei, Diana; Petrovic-Stojanovska, Biljana; Penedo, Carlos; White, Malcolm F; Naismith, James H;
APC: 1,091.96 EUR

Mechanism of DNA loading by the DNA repair helicase XPD

Abstract

The xeroderma pigmentosum group D (XPD) helicase is a component of the transcription factor IIH complex in eukaryotes and plays an essential role in DNA repair in the nucleotide excision repair pathway. XPD is a 5' to 3' helicase with an essential iron-sulfur cluster. Structural and biochemical studies of the monomeric archaeal XPD homologues have aided a mechanistic understanding of this important class of helicase, but several important questions remain open. In particular, the mechanism for DNA loading, which is assumed to require large protein conformational change, is not fully understood. Here, DNA binding by the archaeal XPD helicase from Thermoplasma acidophilum has been investigated using a combination of crystallography, cross-linking, modified substrates and biochemical assays. The data are consistent with an initial tight binding of ssDNA to helicase domain 2, followed by transient opening of the interface between the Arch and 4FeS domains, allowing access to a second binding site on helicase domain 1 that directs DNA through the pore. A crystal structure of XPD from Sulfolobus acidocaldiarius that lacks helicase domain 2 has an otherwise unperturbed structure, emphasizing the stability of the interface between the Arch and 4FeS domains in XPD.

Country
United Kingdom
Related Organizations
Keywords

Models, Molecular, 570, DNA Repair, Thermoplasma, Archaeal Proteins, Amino Acid Motifs, Molecular Sequence Data, 610, DNA, Single-Stranded, Gene Expression, QH426 Genetics, Crystallography, X-Ray, Protein Structure, Secondary, Sulfolobus, Escherichia coli, Cloning, Molecular, QH426, R2C, Binding Sites, Nucleic Acid Enzymes, Protein Stability, Recombinant Proteins, Protein Structure, Tertiary, DNA, Archaeal, BDC, DNA Damage, Protein Binding

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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
43
Top 10%
Top 10%
Top 10%
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gold