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Nucleic Acids Research
Article . 2012 . Peer-reviewed
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Nucleic Acids Research
Article
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PubMed Central
Other literature type . 2012
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Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli

Authors: Tsai, Y-C.; Du, D.; Dominguez-Malfavon, L.; Dimastrogiovanni, D.; Cross, J.; Callaghan, Anastasia; Garcia-Mena, J.; +1 Authors

Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli

Abstract

The RNA degradosome is a multi-enzyme assembly that contributes to key processes of RNA metabolism, and it engages numerous partners in serving its varied functional roles. Small domains within the assembly recognize collectively a diverse range of macromolecules, including the core protein components, the cytoplasmic lipid membrane, mRNAs, non-coding regulatory RNAs and precursors of structured RNAs. We present evidence that the degradosome can form a stable complex with the 70S ribosome and polysomes, and we demonstrate the proximity in vivo of ribosomal proteins and the scaffold of the degradosome, RNase E. The principal interactions are mapped to two, independent, RNA-binding domains from RNase E. RhlB, the RNA helicase component of the degradosome, also contributes to ribosome binding, and this is favoured through an activating interaction with RNase E. The catalytic activity of RNase E for processing 9S RNA (the ribosomal 5S RNA precursor) is repressed in the presence of the ribosome, whereas there is little affect on the cleavage of single-stranded substrates mediated by non-coding RNA, suggestings that the enzyme retains capacity to cleave unstructured substrates when associated with the ribosome. We propose that polysomes may act as antennae that enhance the rates of capture of the limited number of degradosomes, so that they become recruited to sites of active translation to act on mRNAs as they become exposed or tagged for degradation.

Country
United Kingdom
Keywords

Ribosomal Proteins, /dk/atira/pure/core/subjects/biology, Ribosome Subunits, Small, Bacterial, Ribosome Subunits, Large, Bacterial, DEAD-box RNA Helicases, Multienzyme Complexes, Endoribonucleases, Escherichia coli, Fluorescence Resonance Energy Transfer, Protein Interaction Domains and Motifs, RNA Processing, Post-Transcriptional, Biology, Polyribonucleotide Nucleotidyltransferase, Binding Sites, Nucleic Acid Enzymes, Escherichia coli Proteins, 500, Cross-Linking Reagents, Polyribosomes, RNA, RNA, Small Untranslated, Ribosomes, RNA Helicases

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    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
63
Top 10%
Top 10%
Top 10%
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gold