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Nucleic Acids Research
Article . 2009 . Peer-reviewed
License: CC BY NC
Data sources: Crossref
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Nucleic Acids Research
Article
License: CC BY NC
Data sources: UnpayWall
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PubMed Central
Other literature type . 2009
License: CC BY NC
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Contributions of the individual hydrophobic clefts of the Escherichia coli sliding clamp to clamp loading, DNA replication and clamp recycling

Authors: Scouten Ponticelli, Sarah K.; Duzen, Jill M.; Sutton, Mark D.;

Contributions of the individual hydrophobic clefts of the Escherichia coli sliding clamp to clamp loading, DNA replication and clamp recycling

Abstract

The homodimeric Escherichia coli beta sliding clamp contains two hydrophobic clefts with which proteins involved in DNA replication, repair and damage tolerance interact. Deletion of the C-terminal five residues of beta (beta(C)) disrupted both clefts, severely impairing interactions of the clamp with the DnaX clamp loader, as well as the replicative DNA polymerase, Pol III. In order to determine whether both clefts were required for loading clamp onto DNA, stimulation of Pol III replication and removal of clamp from DNA after replication was complete, we developed a method for purification of heterodimeric clamp proteins comprised of one wild-type subunit (beta(+)), and one beta(C) subunit (beta(+)/beta(C)). The beta(+)/beta(C) heterodimer interacted normally with the DnaX clamp loader, and was loaded onto DNA slightly more efficiently than was beta(+). Moreover, beta(+)/beta(C) interacted normally with Pol III, and stimulated replication to the same extent as did beta(+). Finally, beta(+)/beta(C) was severely impaired for unloading from DNA using either DnaX or the delta subunit of DnaX. Taken together, these findings indicate that a single cleft in the beta clamp is sufficient for both loading and stimulation of Pol III replication, but both clefts are required for unloading clamp from DNA after replication is completed.

Keywords

DNA Replication, Escherichia coli Proteins, DNA, Genome Integrity, Repair and Replication, Protein Subunits, Bacterial Proteins, Protein Multimerization, Hydrophobic and Hydrophilic Interactions, DNA Polymerase III, Protein Binding, Sequence Deletion

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
27
Top 10%
Average
Top 10%
Green
gold