
doi: 10.1093/nar/gkl775
pmid: 17108361
pmc: PMC1669738
handle: 11577/3184050 , 11577/3184120 , 11585/42048 , 11585/32186 , 2318/1687634 , 2318/1687475
doi: 10.1093/nar/gkl775
pmid: 17108361
pmc: PMC1669738
handle: 11577/3184050 , 11577/3184120 , 11585/42048 , 11585/32186 , 2318/1687634 , 2318/1687475
Eukaryotic Subcellular Localization DataBase collects the annotations of subcellular localization of eukaryotic proteomes. So far five proteomes have been processed and stored: Homo sapiens, Mus musculus, Caenorhabditis elegans, Saccharomyces cerevisiae and Arabidopsis thaliana. For each sequence, the database lists localization obtained adopting three different approaches: (i) experimentally determined (when available); (ii) homology-based (when possible); and (iii) predicted. The latter is computed with a suite of machine learning based methods, developed in house. All the data are available at our website and can be searched by sequence, by protein code and/or by protein description. Furthermore, a more complex search can be performed combining different search fields and keys. All the data contained in the database can be freely downloaded in flat file format. The database is available at http://gpcr.biocomp.unibo.it/esldb/.
Internet, Saccharomyces cerevisiae Proteins, Proteome, Sequence Homology, Amino Acid, Arabidopsis Proteins, Articles, Mice, User-Computer Interface, Eukaryotic Cells, Animals, Humans, SUBCELLULAR LOCALIZATION; EUKARYOTIC CELL; HOMOLOGY-BASED ANNOTATION; PREDICTION, SUBCELLULAR LOCALIZATION; EUKARYOTIC ORGANISMS; HOMOLOGY-BASED ANNOTATION; PREDICTED ANNOTATION, Caenorhabditis elegans Proteins, Databases, Protein
Internet, Saccharomyces cerevisiae Proteins, Proteome, Sequence Homology, Amino Acid, Arabidopsis Proteins, Articles, Mice, User-Computer Interface, Eukaryotic Cells, Animals, Humans, SUBCELLULAR LOCALIZATION; EUKARYOTIC CELL; HOMOLOGY-BASED ANNOTATION; PREDICTION, SUBCELLULAR LOCALIZATION; EUKARYOTIC ORGANISMS; HOMOLOGY-BASED ANNOTATION; PREDICTED ANNOTATION, Caenorhabditis elegans Proteins, Databases, Protein
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 57 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Top 10% | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Top 10% | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Top 10% |
