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Nucleic Acids Research
Article . 2007 . Peer-reviewed
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Nucleic Acids Research
Article
License: CC BY NC
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PubMed Central
Article . 2007
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DBLP
Article . 2007
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eSLDB: eukaryotic subcellular localization database

Authors: PIERLEONI, ANDREA; MARTELLI, PIER LUIGI; FARISELLI, PIERO; CASADIO, RITA;

eSLDB: eukaryotic subcellular localization database

Abstract

Eukaryotic Subcellular Localization DataBase collects the annotations of subcellular localization of eukaryotic proteomes. So far five proteomes have been processed and stored: Homo sapiens, Mus musculus, Caenorhabditis elegans, Saccharomyces cerevisiae and Arabidopsis thaliana. For each sequence, the database lists localization obtained adopting three different approaches: (i) experimentally determined (when available); (ii) homology-based (when possible); and (iii) predicted. The latter is computed with a suite of machine learning based methods, developed in house. All the data are available at our website and can be searched by sequence, by protein code and/or by protein description. Furthermore, a more complex search can be performed combining different search fields and keys. All the data contained in the database can be freely downloaded in flat file format. The database is available at http://gpcr.biocomp.unibo.it/esldb/.

Country
Italy
Keywords

Internet, Saccharomyces cerevisiae Proteins, Proteome, Sequence Homology, Amino Acid, Arabidopsis Proteins, Articles, Mice, User-Computer Interface, Eukaryotic Cells, Animals, Humans, SUBCELLULAR LOCALIZATION; EUKARYOTIC CELL; HOMOLOGY-BASED ANNOTATION; PREDICTION, SUBCELLULAR LOCALIZATION; EUKARYOTIC ORGANISMS; HOMOLOGY-BASED ANNOTATION; PREDICTED ANNOTATION, Caenorhabditis elegans Proteins, Databases, Protein

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
57
Top 10%
Top 10%
Top 10%
Green
gold