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Nucleic Acids Research
Article . 2006 . Peer-reviewed
Data sources: Crossref
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Nucleic Acids Research
Article
License: CC BY NC
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PubMed Central
Article . 2006
Data sources: PubMed Central
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Spontaneous sharp bending of DNA: role of melting bubbles

Authors: Yuan, Chongli; Rhoades, Elizabeth; Lou, Xiong Wen; Archer, Lynden A.;

Spontaneous sharp bending of DNA: role of melting bubbles

Abstract

The role of centrally located and distributed base pair mismatches ('melting bubbles') on localized bending and stiffness of short dsDNA fragments is evaluated using time-dependent fluorescence lifetime measurements. Distributed melting bubbles are found to induce larger bending angles and decreased levels of stiffness in DNA than centrally located ones of comparable overall size. Our results indicate that spontaneous local opening-up of the DNA duplex could facilitate sharp bending of short DNA strands even in the absence of DNA binding proteins. We also find that the occurrence of two closely spaced melting bubbles will generally be favored when a large energetic barrier must be overcome in forming the desired bent DNA structure.

Keywords

Structural Biology, Base Pair Mismatch, Fluorescence Resonance Energy Transfer, Nucleic Acid Conformation, DNA

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
36
Top 10%
Top 10%
Top 10%
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