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Nucleic Acids Research
Article . 2006 . Peer-reviewed
Data sources: Crossref
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Nucleic Acids Research
Article
License: CC BY NC
Data sources: UnpayWall
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PubMed Central
Other literature type . 2006
Data sources: PubMed Central
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AUG sequences are required to sustain nonsense-codon-mediated suppression of splicing

Authors: Kamhi, Eyal; Yahalom, Galit; Kass, Gideon; Hacham, Yael; Sperling, Ruth; Sperling, Joseph;

AUG sequences are required to sustain nonsense-codon-mediated suppression of splicing

Abstract

More than 90% of human genes are rich in intronic latent 5' splice sites whose utilization in pre-mRNA splicing would introduce in-frame stop codons into the resultant mRNAs. We have therefore hypothesized that suppression of splicing (SOS) at latent 5' splice sites regulates alternative 5' splice site selection in a way that prevents the production of toxic nonsense mRNAs and verified this idea by showing that the removal of such in-frame stop codons is sufficient to activate latent splicing. Splicing control by SOS requires recognition of the mRNA reading frame, presumably recognizing the start codon sequence. Here we show that AUG sequences are indeed essential for SOS. Although protein translation does not seem to be required for SOS, the first AUG is shown here to be necessary but not sufficient. We further show that latent splicing can be elicited upon treatment with pactamycin-a drug known to block translation by its ability to recognize an RNA fold-but not by treatment with other drugs that inhibit translation through other mechanisms. The effect of pactamycin on SOS is dependent neither on steady-state translation nor on the pioneer round of translation. This effect is found for both transfected and endogenous genes, indicating that SOS is a natural mechanism.

Related Organizations
Keywords

Protein Synthesis Inhibitors, Pactamycin, RNA Splicing, Codon, Initiator, Polymerase Chain Reaction, Article, Cell Line, Codon, Nonsense, Cricetinae, Mutation, Aspartate Carbamoyltransferase, RNA Precursors, Animals, Humans, Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing), RNA Splice Sites, RNA, Messenger, Peptide Chain Initiation, Translational, Dihydroorotase, DNA Primers

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
13
Average
Average
Average
Green
gold