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Nucleic Acids Research
Article . 2006 . Peer-reviewed
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Nucleic Acids Research
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ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions

descriptionPublicationkeyboard_double_arrow_right Article , Other literature type 01 Jan 2006 English Publisher:Oxford University Press (OUP)Journal:Nucleic Acids Research, volume 34, pages D204-D206 (issn: 0305-1048, eissn: 1362-4962, Copyright policy )
Authors: K. Abdulla Bava; Koji Kitajima; Hatsuho Uedaira; M. D. Shaji Kumar; Ponraj Prabakaran; M. Michael Gromiha; Akinori Sarai;

doi: 10.1093/nar/gkj103

pmid: 16381846

pmc: PMC1347465

ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions

Abstract

ProTherm and ProNIT are two thermodynamic databases that contain experimentally determined thermodynamic parameters of protein stability and protein-nucleic acid interactions, respectively. The current versions of both the databases have considerably increased the total number of entries and enhanced search interface with added new fields, improved search, display and sorting options. As on September 2005, ProTherm release 5.0 contains 17,113 entries from 771 proteins, retrieved from 1497 scientific articles (approximately 20% increase in data from the previous version). ProNIT release 2.0 contains 4900 entries from 273 research articles, representing 158 proteins. Both databases can be queried using WWW interfaces. Both quick search and advanced search are provided on this web page to facilitate easy retrieval and display of the data from these databases. ProTherm is freely available online at http://gibk26.bse.kyutech.ac.jp/jouhou/Protherm/protherm.html and ProNIT at http://gibk26.bse.kyutech.ac.jp/jouhou/pronit/pronit.html.

Related Organizations
Keywords

Internet, Proteins, RNA-Binding Proteins, DNA, Article, DNA-Binding Proteins, User-Computer Interface, Databases, Genetic, Mutation, RNA, Thermodynamics

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
375
Top 1%
Top 1%
Top 1%
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gold