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The Quest for Orthologs orthology benchmark service in 2022

Authors: Nevers, Yannis; Jones, Tamsin E M; Jyothi, Dushyanth; Yates, Bethan; Ferret, Meritxell; Portell-Silva, Laura; Codo, Laia; +62 Authors
APC: 2,384.64 EUR

The Quest for Orthologs orthology benchmark service in 2022

Abstract

Abstract The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform.

Countries
United Kingdom, United Kingdom, United Kingdom, France, France, Switzerland, Spain, Belgium, Spain
Keywords

Standards, Database design., Proteome, PREDICTION, Inference, Bioinformàtica, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Genetics, Phylogeny; Benchmarking; Genomics/methods; Proteome, Quest for Orthologs consortium, Phylogeny, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Comparative genomics, Software architecture, Biology and Life Sciences, Genomics, Database design, Genetics., Web Server Issue, INFERENCE, Prediction, Orthology Benchmark Service, STANDARDS

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
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59
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Top 10%
Top 1%
36
59
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