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Nucleic Acids Research
Article . 1999 . Peer-reviewed
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Repression of IS200 transposase synthesis by RNA secondary structures

Authors: Beuzón López, Carmen del Rosario; Marqués, Silvia; Casadesús Pursals, Josep;

Repression of IS200 transposase synthesis by RNA secondary structures

Abstract

The IS 200 transposase, a 16 kDa polypeptide encoded by the single open reading frame (ORF) of the insertion element, has been identified using an expression system based on T7 RNA polymerase. In wild-type IS 200, two sets of internal inverted repeats that generate RNA secondary structures provide two independent mechanisms for repression of transposase synthesis. The inverted repeat located near the left end of IS 200 is a transcriptional terminator that terminates read-through transcripts before they reach the IS 200 ORF. The terminator is functional in both directions and may terminate >80% of transcripts. Another control operates at the translational level: transposase synthesis is inhibited by occlusion of the ribosome-binding site (RBS) of the IS 200 ORF. The RBS (5'-AGGGG-3') is occluded by formation of a mRNA stem-loop structure whose 3' end is located only 3 nt upstream of the start codon. This mechanism reduces transposase synthesis approximately 10-fold. Primer extension experiments with AMV reverse transcriptase have provided evidence that this stem-loop RNA structure is actually formed. Tight repression of transposase synthesis, achieved through synergistic mechanisms of negative control, may explain the unusually low transposition frequency of IS 200.

Country
Spain
Related Organizations
Keywords

Transcription, Genetic, Codon, Initiator, Transposases, RNA directed DNA polymerase, Open Reading Frames, Salmonella, Escherichia coli, RNA, Messenger, Cloning, Molecular, Base Pairing, Repetitive Sequences, Nucleic Acid, Terminator Regions, Genetic, Binding Sites, Base Sequence, Messenger RNA, Gene Expression Regulation, Bacterial, RNA, Bacterial, Protein Biosynthesis, DNA Transposable Elements, Nucleic Acid Conformation, Thermodynamics, Ribosomes, Transposase

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
19
Average
Top 10%
Average
Green
gold