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Nucleic Acids Research
Article . 1996 . Peer-reviewed
Data sources: Crossref
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In Vitro Expansion of GGC:GCC Repeats: Identification of the Preferred Strand of Expansion

Authors: J, Ji; N J, Clegg; K R, Peterson; A L, Jackson; C D, Laird; L A, Loeb;

In Vitro Expansion of GGC:GCC Repeats: Identification of the Preferred Strand of Expansion

Abstract

The human fragile-X syndrome, a major cause of inherited mental retardation, is associated with expansion of the trinucleotide repeat GGC:GCC. Repetitive sequences in DNA are subject to slippage during catalysis by DNA polymerases. We characterized the extent of slippage of synthetic GGC:GCC repeats by various DNA polymerases: Taq DNA polymerase, Klenow fragment of DNA polymerase I, DNA Sequence, DNA polymerase-alpha and polymerase-beta, as well as HIV reverse transcriptase. All of these enzymes were found to expand GGC:GCC repeats, with the most extensive expansion exhibited by Taq DNA polymerase. Starting with a template and primer, each 15 nucleotides (nt) in length, the product of one round of synthesis by Taq polymerase is as long as 250 nt. Sequence analysis of cloned DNA fragments expanded by Taq polymerase indicates that expansion involves multiple triplet additions and that it is asymmetric. The asymmetric distribution of terminal nucleotides in the expanded product is consistent with active expansion of the GCC strand and passive additions onto the GGC strand. The preferential elongation and expansion of the GCC strand was confirmed in studies utilizing longer repeats within a single-stranded M-13 template.

Keywords

Fragile X Messenger Ribonucleoprotein 1, Base Sequence, Molecular Sequence Data, RNA-Binding Proteins, Nerve Tissue Proteins, RNA-Directed DNA Polymerase, DNA, DNA-Directed DNA Polymerase, HIV Reverse Transcriptase, Trinucleotide Repeats, Humans, Cloning, Molecular

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
29
Average
Top 10%
Top 10%
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