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Nucleic Acids Research
Article . 1989 . Peer-reviewed
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Solvent interactions stabilising nucleic acid conformers

Authors: R J, Elliott; J M, Goodfellow;

Solvent interactions stabilising nucleic acid conformers

Abstract

The transition of oligonucleotides from the B to the A conformation has been studied by the use of simple geometric calculations aimed at finding possible hydration sites which could stabilize these conformations. The method involves the classification of equally spaced grid points, surrounding the oligonucleotide, into groups depending on whether a water molecule, so placed, could form single, multiple or nil contacts to polar oligonucleotide atoms. The occurrence of the multiple, and therefore bridging, sites is more extensive for the 'A' than the 'B' conformation. Thus, more general evidence is presented in support of the economy of hydration hypothesis in which phosphate groups, in the low humidity 'A' form, have been seen to be bridged by single water molecules. Similar calculations for the 'Z' DNA conformation show a different preference for multiple bridging sites.

Related Organizations
Keywords

Models, Molecular, Polydeoxyribonucleotides, Drug Stability, Oligodeoxyribonucleotides, Poly dA-dT, Solvents, Nucleic Acid Conformation, Hydrogen Bonding, DNA

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
9
Average
Average
Average
gold