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Nucleic Acids Research
Article . 1986 . Peer-reviewed
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Nucleic Acids Research
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Nucleic Acids Research
Article . 1986
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Sequence search on a supercomputer

descriptionPublicationkeyboard_double_arrow_right Article 01 Jan 1986 English Publisher:Oxford University Press (OUP)Journal:Nucleic Acids Research, volume 14, pages 57-64 (issn: 0305-1048, eissn: 1362-4962, Copyright policy )
Authors: Yusaku Tagashira; Osamu Gotoh;

doi: 10.1093/nar/14.1.57

pmid: 3753790

pmc: PMC339355

Sequence search on a supercomputer

Abstract

A set of programs was developed for searching nucleic acid and protein sequence data bases for sequences similar to a given sequence. The programs, written in FORTRAN 77, were optimized for vector processing on a Hitachi S810-20 supercomputer. A search of a 500-residue protein sequence against the entire PIR data base Ver. 1.0 (1) (0.5 M residues) is carried out in a CPU time of 45 sec. About 4 min is required for an exhaustive search of a 1500-base nucleotide sequence against all mammalian sequences (1.2M bases) in Genbank Ver. 29.0. The CPU time is reduced to about a quarter with a faster version.

Keywords

Time Factors, Base Sequence, Computers, Amino Acid Sequence, Software, Information Systems

  • BIP!
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    		 15
    popularity
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    		 Top 0.1%
    influence
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
15
Top 0.1%
Top 0.01%
Top 10%
gold