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Journal of Antimicrobial Chemotherapy
Article . 2010 . Peer-reviewed
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Plasmid double locus sequence typing for IncHI2 plasmids, a subtyping scheme for the characterization of IncHI2 plasmids carrying extended-spectrum β-lactamase and quinolone resistance genes

Authors: Garcia-Fernández A.; Carattoli A.;

Plasmid double locus sequence typing for IncHI2 plasmids, a subtyping scheme for the characterization of IncHI2 plasmids carrying extended-spectrum β-lactamase and quinolone resistance genes

Abstract

IncHI2 plasmids are frequently encountered in clinical enterobacterial strains associated with the dissemination of relevant antimicrobial resistance genes. These plasmids are usually >250 kb, and technical difficulties can impair plasmid DNA purification and comparison by restriction fragment length polymorphism. We analysed the available IncHI2 whole DNA plasmid sequences to devise a rapid typing scheme to categorize the members of this plasmid family into homogeneous groups.We compared the available full IncHI2 plasmid sequences, identifying conserved and variable regions within the backbone of this plasmid family, to devise an IncHI2 typing method based on sequence typing and multiplex PCRs. A collection of IncHI2 plasmids carrying extended-spectrum beta-lactamase and quinolone resistance genes, identified in strains from different sources (animals and humans) and geographical origins, was tested by these typing systems.We devised a plasmid double locus sequence typing (pDLST) scheme and a multiplex PCR discriminating IncHI2 plasmid variants. These systems were tested on a collection of IncHI2 plasmids, demonstrating that the plasmids carrying blaCTX-M-2 and blaCTX-M-9 belonged to two major plasmid variants, which were highly conserved among different enterobacterial species disseminated in several European countries.The ability to recognize and subcategorize plasmids by pDLST in homogeneous groups on the basis of their phylogenetic relatedness can be helpful to analyse their distribution in nature and to discover of their evolutionary origin.

Country
Italy
Keywords

DNA, Bacterial, Polymorphism, Genetic, Molecular Sequence Data, Sequence Analysis, DNA, Quinolones, beta-Lactamases, Anti-Bacterial Agents, Europe, Enterobacteriaceae, beta lactamase CTX M; beta lactamase CTX M2; beta lactamase CTX M9; extended spectrum beta lactamase; quinoline derived antiinfective agent; unclassified drug, article; controlled study; Enterobacteriaceae; Europe; molecular phylogeny; molecular typing; multilocus sequence typing; multiplex polymerase chain reaction; nonhuman; nucleotide sequence; plasmid, Animals; Anti-Bacterial Agents; beta-Lactamases; Cluster Analysis; DNA, Bacterial; Drug Resistance, Bacterial; Enterobacteriaceae; Europe; Humans; Molecular Sequence Data; Phylogeny; Plasmids; Polymorphism, Genetic; Quinolones; Sequence Analysis, DNA, Drug Resistance, Bacterial, Animals, Cluster Analysis, Humans, Phylogeny, Plasmids

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Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
109
Top 1%
Top 1%
Top 10%
bronze