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Diploidy within a Haploid Genus of Entomopathogenic Fungi

Authors: Knud Nor Nielsen; João Felipe Moreira Salgado; Myrsini Eirini Natsopoulou; Thea Kristensen; Jason E Stajich; Henrik H De Fine Licht;

Diploidy within a Haploid Genus of Entomopathogenic Fungi

Abstract

Abstract Fungi in the genus Metarhizium are soil-borne plant–root endophytes and rhizosphere colonizers, but also potent insect pathogens with highly variable host ranges. These ascomycete fungi are predominantly asexually reproducing and ancestrally haploid, but two independent origins of persistent diploidy within the Coleoptera-infecting Metarhizium majus species complex are known and has been attributed to incomplete chromosomal segregation following meiosis during the sexual cycle. There is also evidence for infrequent sexual cycles in the locust-specific pathogenic fungus Metarhizium acridum (Hypocreales: Clavicipitaceae), which is an important entomopathogenic biocontrol agent used for the control of grasshoppers in agricultural systems as an alternative to chemical control. Here, we show that the genome of the M. acridum isolate ARSEF 324, which is formulated and commercially utilized is functionally diploid. We used single-molecule real-time sequencing technology to complete a high-quality assembly of ARSEF 324. K-mer frequencies, intragenomic collinearity between contigs and single nucleotide variant read depths across the genome revealed the first incidence of diploidy described within the species M. acridum. The haploid assembly of 44.7 Mb consisted of 20.8% repetitive elements, which is the highest proportion described of any Metarhizium species. The long-read diploid genome assembly sheds light on past research on this strain, such as unusual high UVB tolerance. The data presented here could fuel future investigation into the fitness landscape of fungi with infrequent sexual reproduction and aberrant ploidy levels, not least in the context of biocontrol agents.

Countries
United States, Denmark
Keywords

570, Metarhizium, Insecta, 0601 Biochemistry and Cell Biology (for), Hypocreales (mesh), Grasshoppers, Haploidy, Microbiology, 3105 Genetics (for-2020), 630, 0604 Genetics (for), genome duplication, Genetics, Animals (mesh), Animals, 3101 Biochemistry and cell biology (for-2020), Developmental Biology (science-metrix), Evolutionary Biology, 31 Biological Sciences (for-2020), 3107 Microbiology (for-2020), Genetics (rcdc), ploidy, 3104 Evolutionary biology (for-2020), Biological Sciences, ascomycete, Grasshoppers (mesh), entomopathogen, Diploidy, parasexual, 0603 Evolutionary Biology (for), Hypocreales, Haploidy (mesh), Biochemistry and Cell Biology, Diploidy (mesh), Insecta (mesh), Developmental Biology, Research Article

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
9
Top 10%
Average
Top 10%
Green
gold