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Database: The Journal of Biological Databases and Curation
Article . 2017 . Peer-reviewed
License: CC BY
Data sources: Crossref
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PubMed Central
Article . 2017
License: CC BY
Data sources: PubMed Central
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DBLP
Article . 2023
Data sources: DBLP
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VerSeDa: vertebrate secretome database

Authors: Ana Rosa Cortázar; José A. Oguiza; Ana M. Aransay; José Luis Lavín;

VerSeDa: vertebrate secretome database

Abstract

Based on the current tools, de novo secretome (full set of proteins secreted by an organism) prediction is a time consuming bioinformatic task that requires a multifactorial analysis in order to obtain reliable in silico predictions. Hence, to accelerate this process and offer researchers a reliable repository where secretome information can be obtained for vertebrates and model organisms, we have developed VerSeDa (Vertebrate Secretome Database). This freely available database stores information about proteins that are predicted to be secreted through the classical and non-classical mechanisms, for the wide range of vertebrate species deposited at the NCBI, UCSC and ENSEMBL sites. To our knowledge, VerSeDa is the only state-of-the-art database designed to store secretome data from multiple vertebrate genomes, thus, saving an important amount of time spent in the prediction of protein features that can be retrieved from this repository directly.VerSeDa is freely available at http://genomics.cicbiogune.es/VerSeDa/index.php.

Country
Spain
Keywords

Secretome databases, Genome, Proteome, Vertebrates, VerSeDa, Animals, Original Article, Vertebrate genomes, Databases, Protein

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
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27
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16
30
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