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HD-CNV: hotspot detector for copy number variants

descriptionPublicationkeyboard_double_arrow_right Article 04 Nov 2012 Canada English Publisher:Oxford University Press (OUP)Journal:Bioinformatics, volume 29, pages 262-263 (issn: 1367-4803, eissn: 1367-4811, Copyright policy )
Authors: Jenna L. Butler; Marjorie Elizabeth Osborne Locke; Kathleen A. Hill; Mark Daley;

doi: 10.1093/bioinformatics/bts650

pmid: 23129301

HD-CNV: hotspot detector for copy number variants

Abstract

Abstract Summary: Copy number variants (CNVs) are a major source of genetic variation. Comparing CNVs between samples is important in elucidating their potential effects in a wide variety of biological contexts. HD-CNV (hotspot detector for copy number variants) is a tool for downstream analysis of previously identified CNV regions from multiple samples, and it detects recurrent regions by finding cliques in an interval graph generated from the input. It creates a unique graphical representation of the data, as well as summary spreadsheets and UCSC (University of California, Santa Cruz) Genome Browser track files. The interval graph, when viewed with other software or by automated graph analysis, is useful in identifying genomic regions of interest for further study. Availability and implementation: HD-CNV is an open source Java code and is freely available, with tutorials and sample data from http://daleylab.org. Contact: jcamer7@uwo.ca

Country
Canada
Related Organizations
Keywords

Genome, DNA Copy Number Variations, Genome, Human, Karyotype, Neurosciences, 610, Genomics, 004, Psychology, Humans, Software, Human

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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 13
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
13
Average
Average
Top 10%
Green
gold