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spacodiR: structuring of phylogenetic diversity in ecological communities

descriptionPublicationkeyboard_double_arrow_right Article 06 Jul 2011Embargo end date: 12 Oct 2018 Switzerland, Belgium English Publisher:Oxford University Press (OUP)Journal:Bioinformatics, volume 27, pages 2,437-2,438 (issn: 1367-4803, eissn: 1367-4811, Copyright policy )
Authors: Jonathan M. Eastman; C. E. Timothy Paine; Olivier J. Hardy;

doi: 10.1093/bioinformatics/btr403 , 10.5167/uzh-154082

pmid: 21737436

handle: 2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/133820

spacodiR: structuring of phylogenetic diversity in ecological communities

Abstract

Abstract Motivation: spacodiR is a cross-platform package, written for the R environment, for studying partitioning of diversity among natural communities in space and time. Complementing and extending existing software, spacodiR allows for hypothesis testing and parameter estimation in studying spatial structuring of species-, phylogenetic- and trait diversities. Availability: Integrated with other software in the R environment and with well documented and demonstrated functions, spacodiR is an open-source package and available at http://cran.r-project.org. Contact: jonathan.eastman@gmail.com; ohardy@ulb.ac.be

Countries
Switzerland, Belgium
Related Organizations
Keywords

1303 Biochemistry, Ecologie, Evolution des espèces, 142-005 142-005, Biota, Data Interpretation, Statistical, Génétique des plantes, 1312 Molecular Biology, 1706 Computer Science Applications, 2613 Statistics and Probability, 2605 Computational Mathematics, Phylogeny, Software, 1703 Computational Theory and Mathematics

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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 23
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
23
Top 10%
Top 10%
Top 10%
Green
gold