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BicOverlapper: A tool for bicluster visualization

descriptionPublicationkeyboard_double_arrow_right Article 05 Mar 2008 Spain English Publisher:Oxford University Press (OUP)Journal:Bioinformatics, volume 24, pages 1,212-1,213 (issn: 1367-4803, eissn: 1367-4811, Copyright policy )
Authors: Rodrigo Santamaría; Roberto Therón; Luis Quintales;

doi: 10.1093/bioinformatics/btn076

pmid: 18321885

handle: 10366/122169

BicOverlapper: A tool for bicluster visualization

Abstract

Abstract Summary: BicOverlapper is a tool to visualize biclusters from gene-expression matrices in a way that helps to compare biclustering methods, to unravel trends and to highlight relevant genes and conditions. A visual approach can complement biological and statistical analysis and reduce the time spent by specialists interpreting the results of biclustering algorithms. The technique is based on a force-directed graph where biclusters are represented as flexible overlapped groups of genes and conditions. Availability: The BicOverlapper software and supplementary material are available at http://vis.usal.es/bicoverlapper Contact: rodri@usal.es

Country
Spain
Related Organizations
Keywords

Biclustering, Investigaci?n, Models, Biological, User-Computer Interface, Multigene Family, Investigación, Computer Graphics, Data Display, Cluster Analysis, Computer Simulation, 1203 Ciencia de los ordenadores, Software, Visualization

  • BIP!
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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 51
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
51
Top 10%
Top 10%
Top 10%
Green
gold