Alvira: comparative genomics of viral strains

descriptionPublicationkeyboard_double_arrow_right Article 05 Jun 2007 France English Publisher:Oxford University Press (OUP)Journal:Bioinformatics, volume 23, pages 2,178-2,179 (issn: 1367-4803, eissn: 1367-4811,

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Authors: Enault, François; Fremez, Romain; Baranowski, Eric; Faraut, Thomas;

doi: 10.1093/bioinformatics/btm293

pmid: 17550913

Alvira: comparative genomics of viral strains

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Abstract

Abstract Motivation: The Alvira tool is a general purpose multiple sequence alignment viewer with a special emphasis on the comparative analysis of viral genomes. This new tool has been devised specifically to address the problem of the simultaneous analysis of a large number of viral strains. The multiple alignment is embedded in a graph that can be explored at different levels of resolution. Availability: The Alvira software is available at: http://bioinfo.genopole-toulouse.prd.fr/Alvira Contact: fenault@toulouse.inra.fr Supplementary information: A tutorial is available at Alvira's homepage.

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Keywords

COMPARATIVE GENOMICS, Multiple alignment, [SDV]Life Sciences [q-bio], Molecular Sequence Data, MESH: Sequence Alignment, MESH: Algorithms, Genome, Viral, MESH: Base Sequence, MESH: Viruses, Viral quasispecies, MESH: Sequence Analysis, MESH: Software, User-Computer Interface, 616, Computer Graphics, MESH: Genome, Viral, Genomes, Génétique, MESH: User-Computer Interface, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM], MESH: Molecular Sequence Data, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Base Sequence, BIOINFORMATICS, Chromosome Mapping, DNA, Sequence Analysis, DNA, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], GENOMIQUE, 004, [SDV] Life Sciences [q-bio], Viruses, VIRUS, MESH: Computer Graphics, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], MESH: Chromosome Mapping, GENOMICS, Sequence Alignment, Algorithms, Software

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