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Bioinformatics
Article . 2007 . Peer-reviewed
Data sources: Crossref
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Bioinformatics
Article
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Bioinformatics
Article . 2007
Data sources: Europe PubMed Central
DBLP
Article . 2007
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OBO to OWL: a protégé OWL tab to read/save OBO ontologies

descriptionPublicationkeyboard_double_arrow_right Article 12 May 2007 English Publisher:Oxford University Press (OUP)Journal:Bioinformatics, volume 23, pages 1,868-1,870 (issn: 1367-4803, eissn: 1367-4811, Copyright policy )
Authors: Dilvan A. Moreira; Mark A. Musen;

doi: 10.1093/bioinformatics/btm258

pmid: 17496317

OBO to OWL: a protégé OWL tab to read/save OBO ontologies

Abstract

AbstractThe Open Biomedical Ontologies (OBO) format from the GO consortium is a very successful format for biomedical ontologies, including the Gene Ontology. But it lacks formal computational definitions for its constructs and tools, like DL reasoners, to facilitate ontology development/maintenance. We describe the OBO Converter, a Java tool to convert files from OBO format to Web Ontology Language (OWL) (and vice versa) that can also be used as a Protégé Tab plug-in. It uses the OBO to OWL mapping provided by the National Center for Biomedical Ontologies (NCBO) (a joint effort of OBO developers and OWL experts) and offers options to ease the task of saving/reading files in both formats.Availability: bioontology.org/tools/oboinowl/obo_converter.htmlContact: dilvan@stanford.eduSupplementary information: Supplementary data are available at Bioinformatics online.

Related Organizations
Keywords

Computers, Computational Biology, Information Storage and Retrieval, User-Computer Interface, Databases, Genetic, Computer Graphics, Animals, Database Management Systems, Humans, Programming Languages, Information Science, Software

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    popularity
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    		 Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
37
Top 10%
Top 10%
Top 10%
gold