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Bioinformatics
Article
Data sources: UnpayWall
Bioinformatics
Article . 2005 . Peer-reviewed
Data sources: Crossref
Bioinformatics
Article . 2005
DBLP
Article . 2024
Data sources: DBLP
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ExPrimer: to design primers from exon--exon junctions

Authors: Kuljeet S. Sandhu; Kshitish K. Acharya;

ExPrimer: to design primers from exon--exon junctions

Abstract

ExPrimer is a web-based computer program to design primers mainly from a specified exon-exon junction (E-E-jn) of a gene of interest. The tool suggests the optimum primer-pair(s) of which the right (reverse) primer represents a particular E-E-jn of the mRNA. The 'product length' decides the location of the left primer. The results also include all other primer pairs considered and their 'scores'. ExPrimer can use the NCBI BLASTn program for sequence specificity of primers. The tool is useful in many areas of molecular biology research that involve hybridization of short sequences with mRNA or cDNA.http://exprimer.ibab.ac.in/exprimer_html/exprimer.html

Keywords

Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, RNA, Computer-Aided Design, Exons, RNA, Messenger, Sequence Alignment, Algorithms, In Situ Hybridization, Software, DNA Primers

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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
11
Top 10%
Top 10%
Average
bronze