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Bioinformatics
Article . 2004 . Peer-reviewed
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Bioinformatics
Article
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http://www.cs.rpi.edu/%7Ezaki/...
Part of book or chapter of book
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Bioinformatics
Article . 2007
https://doi.org/10.1007/1-8462...
Part of book or chapter of book . 2005 . Peer-reviewed
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DBLP
Conference object . 2020
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Predicting protein folding pathways

Authors: Mohammed Javeed Zaki; Vinay Nadimpally; Deb Bardhan; Chris Bystroff;

Predicting protein folding pathways

Abstract

Abstract Summary: A structured folding pathway, which is a time ordered sequence of folding events, plays an important role in the protein folding process and hence, in the conformational search. Pathway prediction, thus gives more insight into the folding process and is a valuable guiding tool to search the conformation space. In this paper, we propose a novel ‘unfolding’ approach to predict the folding pathway. We apply graph-based methods on a weighted secondary structure graph of a protein to predict the sequence of unfolding events. When viewed in reverse this yields the folding pathway. We demonstrate the success of our approach on several proteins whose pathway is partially known.

Related Organizations
Keywords

Models, Molecular, Protein Folding, Models, Chemical, Protein Conformation, Sequence Analysis, Protein, Molecular Conformation, Proteins, Computer Simulation, Amino Acid Sequence

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    19
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
19
Average
Top 10%
Average
gold