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Bioinformatics
Article . 2004 . Peer-reviewed
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MuSiC: a tool for multiple sequence alignment with constraints

descriptionPublicationkeyboard_double_arrow_right Article 01 Apr 2004 English Publisher:Oxford University Press (OUP)Journal:Bioinformatics, volume 20, pages 2,309-2,311 (issn: 1367-4803, eissn: 1367-4811, Copyright policy )
Authors: Yin-Te Tsai; Yen Pin Huang; Ching Ta Yu; Chin Lung Lu;

doi: 10.1093/bioinformatics/bth220

pmid: 15059840

MuSiC: a tool for multiple sequence alignment with constraints

Abstract

Abstract Summary: MuSiC is a web server to perform the constrained alignment of a set of sequences, such that the user-specified residues/nucleotides are aligned with each other. The input of the MuSiC system consists of a set of protein/DNA/RNA sequences and a set of user-specified constraints, each with a fragment of residue/nucleotide that (approximately) appears in all input sequences. The output of MuSiC is a constrained multiple sequence alignment in which the fragments of the input sequences whose residues/nucleotides exhibit a given degree of similarity to a constraint are aligned together. The current MuSiC system is implemented in Java language and can be accessed via a simple web interface. Availability: http://genome.life.nctu.edu.tw/MUSIC

Related Organizations
Keywords

Internet, User-Computer Interface, Information Storage and Retrieval, Programming Languages, Sequence Alignment, Sequence Analysis, Algorithms, Software

  • BIP!
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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 22
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
22
Average
Top 10%
Top 10%
gold