Visualization for genomics: the Microbial Genome Viewer
Copyright policy )Visualization for genomics: the Microbial Genome Viewer
Abstract Summary: A Web-based visualization tool, the Microbial Genome Viewer, is presented that allows the user to combine complex genomic data in a highly interactive way. This Web tool enables the interactive generation of chromosome wheels and linear genome maps from genome annotation data stored in a MySQL database. The generated images are in scalable vector graphics (SVG) format, which is suitable for creating high-quality scalable images and dynamic Web representations. Gene-related data such as transcriptome and time-course microarray experiments can be superimposed on the maps for visual inspection. Availability: The Microbial Genome Viewer 1.0 is freely available at http://www.cmbi.kun.nl/MGV
- Radboud University Nijmegen Medical Centre Netherlands
- Radboud University Nijmegen Netherlands
- Vrije Universiteit Amsterdam Netherlands
Internet, Bioinformatics, Gene Expression Profiling, Chromosome Mapping, Information Storage and Retrieval, Genomics, Online Systems, User-Computer Interface, UMCN 5.3: Cellular energy metabolism, Computer Graphics, Genome, Fungal, Genome, Bacterial
Internet, Bioinformatics, Gene Expression Profiling, Chromosome Mapping, Information Storage and Retrieval, Genomics, Online Systems, User-Computer Interface, UMCN 5.3: Cellular energy metabolism, Computer Graphics, Genome, Fungal, Genome, Bacterial
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