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pmid: 39589902
pmc: PMC11631471
Abstract Motivation Bulk RNA expression data are widely accessible, whereas single-cell data are relatively scarce in comparison. However, single-cell data offer profound insights into the cellular composition of tissues and cell type-specific gene regulation, both of which remain hidden in bulk expression analysis. Results Here, we present tissueResolver, an algorithm designed to extract single-cell information from bulk data, enabling us to attribute expression changes to individual cell types. When validated on simulated data tissueResolver outperforms competing methods. Additionally, our study demonstrates that tissueResolver reveals cell type-specific regulatory distinctions between the activated B-cell-like (ABC) and germinal center B-cell-like (GCB) subtypes of diffuse large B-cell lymphomas (DLBCL). Availability and implementation R package available at https://github.com/spang-lab/tissueResolver (archived as 10.5281/zenodo.14160846). Code for reproducing the results of this article is available at https://github.com/spang-lab/tissueResolver-docs archived as swh:1:dir:faea2d4f0ded30de774b28e028299ddbdd0c4f89).
ddc:004, Original Paper, Gene Expression Profiling, Humans, cell type-specific expression, cell-specific gene regulation, cellular composition, deconvolution, Lymphoma, Large B-Cell, Diffuse, Single-Cell Analysis, 004 Informatik, Algorithms, Software
ddc:004, Original Paper, Gene Expression Profiling, Humans, cell type-specific expression, cell-specific gene regulation, cellular composition, deconvolution, Lymphoma, Large B-Cell, Diffuse, Single-Cell Analysis, 004 Informatik, Algorithms, Software
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