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Bioinformatics
Article . 2002 . Peer-reviewed
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Bioinformatics
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TROLL—Tandem Repeat Occurrence Locator

descriptionPublicationkeyboard_double_arrow_right Article 01 Apr 2002 English Publisher:Oxford University Press (OUP)Journal:Bioinformatics, volume 18, pages 634-636 (issn: 1367-4803, eissn: 1367-4811, Copyright policy )
Authors: Adalberto T. Castelo; Wellington Santos Martins; Guang R. Gao;

doi: 10.1093/bioinformatics/18.4.634

pmid: 12016062

TROLL—Tandem Repeat Occurrence Locator

Abstract

Abstract Summary: Tandem Repeat Occurrence Locator (TROLL), is a light-weight Simple Sequence Repeat (SSR) finder based on a slight modification of the Aho–Corasick algorithm. It is fast and only requires a standard Personal Computer (PC) to operate. We report running times of 127 s to find all SSRs of length 20 bp or more on the complete Arabdopsis genome—approx. 130 Mbases divided in five chromosomes—using a PC Athlon 650 MHz with 256 MB of RAM. Availability: TROLL is an open source project and is available at http://finder.sourceforge.net. Contact: castelo@capsl.udel.edu

Related Organizations
Keywords

User-Computer Interface, Tandem Repeat Sequences, Arabidopsis, Sequence Analysis, DNA, Sensitivity and Specificity, Algorithms, Genome, Plant, Software, Microsatellite Repeats, Pattern Recognition, Automated

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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 183
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
183
Top 1%
Top 1%
Top 10%
gold