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Bioinformatics Advances
Article . 2024 . Peer-reviewed
License: CC BY
Data sources: Crossref
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PubMed Central
Other literature type . 2025
License: CC BY
Data sources: PubMed Central
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SocialViruses: integrating quantitative phage–bacteria and phage–phage interaction networks for rational cocktail design

Authors: Felipe Molina; Manuel Menor-Flores; Miguel A Vega-Rodríguez;

SocialViruses: integrating quantitative phage–bacteria and phage–phage interaction networks for rational cocktail design

Abstract

Abstract Motivation Phage therapy is emerging as a promising alternative to antibiotics in biomedical research, highlighting the growing need for computational tools to rationally design effective phage cocktails. However, its clinical potential is often compromised by the evolution of heritable bacterial resistance, which is frequently exacerbated by repeated phage exposure. This can lead to broad-spectrum cross-resistance and reduced long-term efficacy. Existing approaches typically rely on host range matrices but often overlook viral interference and the complex, non-binary nature of virus–host interactions. Results We present SocialViruses, a tool for designing optimized phage cocktails selecting up to twelve viruses and using two alternative algorithms. SocialViruses integrates quantitative host range infection and virus–virus interaction matrices to guide cocktail design. It produces a detailed report with key quality metrics and allows users to define multiple cocktails while minimizing viral interference and managing co-infection redundancy. Availability and implementation SocialViruses is freely available as a Cytoscape application and can be downloaded from: https://apps.cytoscape.org/apps/SocialViruses.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green
gold