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Briefings in Bioinformatics
Article
License: implied-oa
Data sources: UnpayWall
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PubMed Central
Article . 2016
License: CC BY NC
Data sources: PubMed Central
Briefings in Bioinformatics
Article . 2016 . Peer-reviewed
Data sources: Crossref
DBLP
Article . 2020
Data sources: DBLP
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Transferring entropy to the realm of GxG interactions

Authors: Paola G. Ferrario; Inke R. König;

Transferring entropy to the realm of GxG interactions

Abstract

Genome-wide association studies are moving to genome-wide interaction studies, as the genetic background of many diseases appears to be more complex than previously supposed. Thus, many statistical approaches have been proposed to detect gene-gene (GxG) interactions, among them numerous information theory-based methods, inspired by the concept of entropy. These are suggested as particularly powerful and, because of their nonlinearity, as better able to capture nonlinear relationships between genetic variants and/or variables. However, the introduced entropy-based estimators differ to a surprising extent in their construction and even with respect to the basic definition of interactions. Also, not every entropy-based measure for interaction is accompanied by a proper statistical test. To shed light on this, a systematic review of the literature is presented answering the following questions: (1) How are GxG interactions defined within the framework of information theory? (2) Which entropy-based test statistics are available? (3) Which underlying distribution do the test statistics follow? (4) What are the given strengths and limitations of these test statistics?

Keywords

Models, Statistical, Models, Genetic, Entropy, Papers, Information Theory, Genetic Variation, Humans, Epistasis, Genetic, Genomics, Genome-Wide Association Study

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
12
Top 10%
Average
Average
Green
hybrid