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Briefings in Bioinformatics
Article . 2001 . Peer-reviewed
Data sources: Crossref
DBLP
Article . 2001
Data sources: DBLP
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Analysis of cDNA microarray images

Authors: Yee Hwa Yang; Michael J. Buckley; Terence P. Speed;

Analysis of cDNA microarray images

Abstract

Microarrays are part of a new class of biotechnologies that allow the monitoring of expression levels for thousands of genes simultaneously. Image analysis is an important aspect of microarray experiments, one that can have a potentially large impact on subsequent analyses, such as clustering or the identification of differentially expressed genes. This paper reviews a number of existing image analysis methods used on cDNA microarray data. In particular, it describes and discusses the different segmentation and background adjustment methods. It was found that in some cases background adjustment can substantially reduce the precision--that is, increase the variability of low-intensity spot values. In contrast, the choice of segmentation procedure seems to have a smaller impact.

Keywords

Data Interpretation, Statistical, Image Processing, Computer-Assisted, Fluorescent Dyes, Oligonucleotide Array Sequence Analysis

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
136
Top 10%
Top 1%
Top 10%
bronze