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Journal of Computational Biology
Article . 2016 . Peer-reviewed
License: Mary Ann Liebert TDM
Data sources: Crossref
https://dx.doi.org/10.48550/ar...
Article . 2015
License: arXiv Non-Exclusive Distribution
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On Tree-Based Phylogenetic Networks

Authors: Zhang, Louxin;

On Tree-Based Phylogenetic Networks

Abstract

A large class of phylogenetic networks can be obtained from trees by the addition of horizontal edges between the tree edges. These networks are called tree based networks. Reticulation-visible networks and child-sibling networks are all tree based. In this work, we present a simply necessary and sufficient condition for tree-based networks and prove that there is a universal tree based network for each set of species such that every phylogenetic tree on the same species is a base of this network. The existence of universal tree based network implies that for any given set of phylogenetic trees (resp. clusters) on the same species there exists a tree base network that display all of them.

17 pages, 6 figures

Country
Singapore
Keywords

Technology, Biochemistry & Molecular Biology, reticulation visibility, Statistics & Probability, RECOMBINATION, Biochemical Research Methods, Interdisciplinary Applications, phylogenetic tree, Quantitative Biology - Populations and Evolution, Phylogeny, Science & Technology, Models, Genetic, tree-base network, Populations and Evolution (q-bio.PE), Computational Biology, 004, COALESCENT, Biotechnology & Applied Microbiology, FOS: Biological sciences, Physical Sciences, Computer Science, horizontal gene transfer, Mathematical & Computational Biology, Life Sciences & Biomedicine, Mathematics, Algorithms

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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    44
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
44
Top 10%
Top 10%
Top 10%
Green
bronze