
RNA polymerase I (Pol I) is a highly efficient enzyme specialized in synthesizing most ribosomal RNAs. After nucleosome deposition at each round of rDNA replication, the Pol I transcription machinery has to deal with nucleosomal barriers. It has been suggested that Pol I-associated factors facilitate chromatin transcription, but it is unknown whether Pol I has an intrinsic capacity to transcribe through nucleosomes. Here, we used in vitro transcription assays to study purified WT and mutant Pol I variants from the yeast Saccharomyces cerevisiae and compare their abilities to pass a nucleosomal barrier with those of yeast Pol II and Pol III. Under identical conditions, purified Pol I and Pol III, but not Pol II, could transcribe nucleosomal templates. Pol I mutants lacking either the heterodimeric subunit Rpa34.5/Rpa49 or the C-terminal part of the specific subunit Rpa12.2 showed a lower processivity on naked DNA templates, which was even more reduced in the presence of a nucleosome. Our findings suggest that the lobe-binding subunits Rpa34.5/Rpa49 and Rpa12.2 facilitate passage through nucleosomes, suggesting possible cooperation among these subunits. We discuss the contribution of Pol I-specific subunit domains to efficient Pol I passage through nucleosomes in the context of transcription rate and processivity.
DNA Replication, Transcription, Genetic, RNA Polymerase III, Saccharomyces cerevisiae, DNA, Ribosomal, Chromatin, Nucleosomes, Protein Subunits, RNA Polymerase I, RNA Polymerase II, Promoter Regions, Genetic, Ribosomes, Protein Binding
DNA Replication, Transcription, Genetic, RNA Polymerase III, Saccharomyces cerevisiae, DNA, Ribosomal, Chromatin, Nucleosomes, Protein Subunits, RNA Polymerase I, RNA Polymerase II, Promoter Regions, Genetic, Ribosomes, Protein Binding
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