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Journal of Biological Chemistry
Article . 2004 . Peer-reviewed
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Journal of Biological Chemistry
Article
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Probing the Functional Importance of the Hexameric Ring Structure of RNase PH

Authors: Choi, JM; Park, EY; Kim, JH; Chang, SK; Cho, YJ;

Probing the Functional Importance of the Hexameric Ring Structure of RNase PH

Abstract

RNase PH is a phosphate-dependent exoribonuclease that catalyzes the removal of nucleotides at the 3' end of the tRNA precursor, leading to the release of nucleoside diphosphate, and generates the CCA end during the maturation process. The 1.9-A crystal structures of the apo and the phosphate-bound forms of RNase PH from Pseudomonas aeruginosa reveal a monomeric RNase PH with an alpha/beta-fold tightly associated into a hexameric ring structure in the form of a trimer of dimers. A five ion pair network, Glu-63-Arg-74-Asp-116-Arg-77-Asp-118 and an ion-pair Glu-26-Arg-69 that are positioned symmetrically in the trimerization interface play critical roles in the formation of a hexameric ring. Single or double mutations of Arg-69, Arg-74, or Arg-77 in these ion pairs leads to the dissociation of the RNase PH hexamer into dimers without perturbing the overall monomeric structure. The dissociated RNase PH dimer completely lost its binding affinity and catalytic activity against a precursor tRNA. Our structural and mutational analyses of RNase PH demonstrate that the hexameric ring formation is a critical feature for the function of members of the RNase PH family.

Country
Korea (Republic of)
Related Organizations
Keywords

Models, Molecular, PROTEINS, Macromolecular Substances, Protein Conformation, Molecular Sequence Data, ANGSTROM RESOLUTION, Crystallography, X-Ray, Polymerase Chain Reaction, MATURATION, CRYSTAL-STRUCTURE, Amino Acid Sequence, POLYNUCLEOTIDE PHOSPHORYLASE, PRECURSORS, INVITRO, PATHWAYS, Recombinant Proteins, Amino Acid Substitution, ESCHERICHIA-COLI, Exoribonucleases, Mutagenesis, Site-Directed, Thermodynamics, SYSTEM, Bacillus subtilis

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
27
Top 10%
Top 10%
Top 10%
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