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zbMATH Open
Article . 1972
Data sources: zbMATH Open
Proceedings of the National Academy of Sciences
Article . 1972 . Peer-reviewed
Data sources: Crossref
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Matching Sequences under Deletion/Insertion Constraints

Matching sequences under deletion/insertion constraints
Authors: Sankoff, David;

Matching Sequences under Deletion/Insertion Constraints

Abstract

Given two finite sequences, we wish to find the longest common subsequences satisfying certain deletion/insertion constraints. Consider two successive terms in the desired subsequence. The distance between their positions must be the same in the two original sequences for all but a limited number of such pairs of successive terms. Needleman and Wunsch gave an algorithm for finding longest common subsequences without constraints. This is improved from the viewpoint of computational economy. An economical algorithm is then elaborated for finding subsequences satisfying deletion/insertion constraints. This result is useful in the study of genetic homology based on nucleotide or amino-acid sequences.

Related Organizations
Keywords

Base Sequence, Amino Acid Sequence, Designs and configurations, Mathematics

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    239
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
239
Top 1%
Top 0.01%
Top 10%
bronze