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The Journal of Chemical Physics
Article . 2008 . Peer-reviewed
Data sources: Crossref
https://dx.doi.org/10.48550/ar...
Article . 2008
License: arXiv Non-Exclusive Distribution
Data sources: Datacite
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Charge-transport-mediated recruitment of DNA repair enzymes

Authors: Fok, Pak-Wing; Guo, Chin-Lin; Chou, Tom;

Charge-transport-mediated recruitment of DNA repair enzymes

Abstract

Damaged or mismatched bases in DNA can be repaired by base excision repair enzymes (BER) that replace the defective base. Although the detailed molecular structures of many BER enzymes are known, how they colocalize to lesions remains unclear. One hypothesis involves charge transport (CT) along DNA [Yavin et al., Proc. Natl. Acad. Sci. U.S.A. 102, 3546 (2005)]. In this CT mechanism, electrons are released by recently adsorbed BER enzymes and travel along the DNA. The electrons can scatter (by heterogeneities along the DNA) back to the enzyme, destabilizing and knocking it off the DNA, or they can be absorbed by nearby lesions and guanine radicals. We develop a stochastic model to describe the electron dynamics and compute probabilities of electron capture by guanine radicals and repair enzymes. We also calculate first passage times of electron return and ensemble average these results over guanine radical distributions. Our statistical results provide the rules that enable us to perform implicit-electron Monte Carlo simulations of repair enzyme binding and redistribution near lesions. When lesions are electron absorbing, we show that the CT mechanism suppresses wasteful buildup of enzymes along intact portions of the DNA, maximizing enzyme concentration near lesions.

Country
United States
Keywords

570, Quantitative Biology - Subcellular Processes, Time Factors, enzymes, Electrons, Models, Biological, Absorption, Electron Transport, biotransport, molecular biophysics, Subcellular Processes (q-bio.SC), Probability, Stochastic Processes, Monte Carlo methods, Biomolecules (q-bio.BM), DNA, DNA Repair Enzymes, Quantitative Biology - Biomolecules, FOS: Biological sciences, stochastic processes, Adsorption, Monte Carlo Method, DNA Damage

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    popularity
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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
14
Average
Average
Average
Green
bronze