
doi: 10.1063/1.2138702
pmid: 16392945
We investigate the effect of backflow on the translocation dynamics of short, flexible polymer chains threading through a small hole in a wall. We find that hydrodynamic interactions between polymer beads play an important role in determining the translocation time distribution: as a monomer moves through the hole it sets up a flow field which transfers momentum to neighboring monomers, thus helping them to move in the same direction. Translocation times are calculated by using the velocity-Verlet algorithm to solve the equations of motion of a polymer which moves in a fluid described by the stochastic rotation algorithm, a particle-based Navier-Stokes solver.
Stochastic Processes, Models, Statistical, Time Factors, Polymers, Molecular Conformation, Models, Theoretical, Models, Biological, Diffusion, Motion, Protein Transport, Cations, Computer Simulation, Algorithms
Stochastic Processes, Models, Statistical, Time Factors, Polymers, Molecular Conformation, Models, Theoretical, Models, Biological, Diffusion, Motion, Protein Transport, Cations, Computer Simulation, Algorithms
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