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The Journal of Chemical Physics
Article . 2004 . Peer-reviewed
Data sources: Crossref
https://dx.doi.org/10.48550/ar...
Article . 2004
License: arXiv Non-Exclusive Distribution
Data sources: Datacite
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Thermodynamics of β-amyloid fibril formation

Authors: G. Tiana; F. Simona; R. A. Broglia; G. Colombo;

Thermodynamics of β-amyloid fibril formation

Abstract

Amyloid fibers are aggregates of proteins. They are built out of a peptide called β-amyloid (Aβ) containing between 41 and 43 residues, produced by the action of an enzyme which cleaves a much larger protein known as the amyloid precursor protein (APP). X-ray diffraction experiments have shown that these fibrils are rich in β-structures, whereas the shape of the peptide displays an α-helix structure within the APP in its biologically active conformation. A realistic model of fibril formation is developed based on the 17 residues Aβ12-28 amyloid peptide, which has been shown to form fibrils structurally similar to those of the whole Aβ peptide. With the help of physical arguments and in keeping with experimental findings, the Aβ12-28 monomer is assumed to be in four possible states (i.e., native helix conformation, β-hairpin, globular low-energy state, and unfolded state). Making use of these monomeric states, oligomers (dimers, tertramers, and octamers) were constructed. With the help of short, detailed molecular dynamics calculations of the three monomers and of a variety of oligomers, energies for these structures were obtained. Making use of these results within the framework of a simple yet realistic model to describe the entropic terms associated with the variety of amyloid conformations, a phase diagram can be calculated of the whole many-body system, leading to a thermodynamical picture in overall agreement with the experimental findings. In particular, the existence of micellar metastable states seem to be a key issue to determine the thermodynamical properties of the system.

Countries
Denmark, Italy
Keywords

Models, Molecular, Amyloid, Amyloid beta-Peptides, Models, Statistical, Chemical Phenomena, Chemistry, Physical, Protein Conformation, Entropy, Molecular Sequence Data, Biophysics, Biomolecules (q-bio.BM), 540, 530, Biophysical Phenomena, Quantitative Biology - Biomolecules, X-Ray Diffraction, FOS: Biological sciences, Humans, Thermodynamics, Amino Acid Sequence, Peptides, Micelles

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
29
Top 10%
Top 10%
Top 10%
Green
bronze