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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao European Journal of ...arrow_drop_down
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European Journal of Biochemistry
Article . 2002 . Peer-reviewed
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Modelling of simple and complex calcium oscillations

From single‐cell responses to intercellular signalling
Authors: Marko Marhl; Stefan Schuster; Stefan Schuster; Thomas Höfer;

Modelling of simple and complex calcium oscillations

Abstract

This review provides a comparative overview of recent developments in the modelling of cellular calcium oscillations. A large variety of mathematical models have been developed for this wide‐spread phenomenon in intra‐ and intercellular signalling. From these, a general model is extracted that involves six types of concentration variables: inositol 1,4,5‐trisphosphate (IP3), cytoplasmic, endoplasmic reticulum and mitochondrial calcium, the occupied binding sites of calcium buffers, and the fraction of active IP3 receptor calcium release channels. Using this framework, the models of calcium oscillations can be classified into ‘minimal’ models containing two variables and ‘extended’ models of three and more variables. Three types of minimal models are identified that are all based on calcium‐induced calcium release (CICR), but differ with respect to the mechanisms limiting CICR. Extended models include IP3–calcium cross‐coupling, calcium sequestration by mitochondria, the detailed gating kinetics of the IP3 receptor, and the dynamics of G‐protein activation. In addition to generating regular oscillations, such models can describe bursting and chaotic calcium dynamics. The earlier hypothesis that information in calcium oscillations is encoded mainly by their frequency is nowadays modified in that some effect is attributed to amplitude encoding or temporal encoding. This point is discussed with reference to the analysis of the local and global bifurcations by which calcium oscillations can arise. Moreover, the question of how calcium binding proteins can sense and transform oscillatory signals is addressed. Recently, potential mechanisms leading to the coordination of oscillations in coupled cells have been investigated by mathematical modelling. For this, the general modelling framework is extended to include cytoplasmic and gap‐junctional diffusion of IP3 and calcium, and specific models are compared. Various suggestions concerning the physiological significance of oscillatory behaviour in intra‐ and intercellular signalling are discussed. The article is concluded with a discussion of obstacles and prospects.

Keywords

Receptors, Cytoplasmic and Nuclear, Inositol 1,4,5-Trisphosphate, Models, Biological, Mitochondria, Animals, Humans, Inositol 1,4,5-Trisphosphate Receptors, Calcium, Calcium Channels, Calcium Signaling, Phosphorylation, Mathematics

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    citations
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    355
    popularity
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    Top 10%
    influence
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    Top 1%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
355
Top 10%
Top 1%
Top 1%
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