Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Copyright policy )Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
AbstractThe full exploration of gene-environment interactions requires model organisms with well-characterized ecological interactions in their natural environment, manipulability in the laboratory and genomic tools. The waterfleaDaphnia magnais an established ecological and toxicological model species, central to the food webs of freshwater lentic habitats and sentinel for water quality. Its tractability and cyclic parthenogenetic life-cycle are ideal to investigate links between genes and the environment. Capitalizing on this unique model system, the STRESSFLEA consortium generated a comprehensive RNA-Seq data set by exposing two inbred genotypes ofD. magnaand a recombinant cross of these genotypes to a range of environmental perturbations. Gene models were constructed from the transcriptome data and mapped onto the draft genome ofD. magnausing EvidentialGene. The transcriptome data generated here, together with the available draft genome sequence ofD. magnaand a high-density genetic map will be a key asset for future investigations in environmental genomics.
- University of Sheffield United Kingdom
- KU Leuven Belgium
- Lawrence Berkeley National Laboratory United States
- Université de Toulouse France
- DePaul University United States
Statistics and Probability, 570, Data Descriptor, DATABASE, Bioinformatics and Computational Biology, Library and Information Sciences, Microbiology, Education, Databases, Genetic, Databases, Genetic, Genetics, FUNCTIONAL GENOMICS, Animals, ECOSYSTEMS DAPHNIA, ADAPTATION, Science & Technology, Genome, Base Sequence, Prevention, Human Genome, Biology and Life Sciences, Biological Sciences, Corrigenda, Computer Science Applications, Multidisciplinary Sciences, MODEL, ALIGNMENT, Daphnia, Genetics, developmental biology, physiology, ZOOPLANKTON, MAP, Science & Technology - Other Topics, RNA, Gene-Environment Interaction, Statistics, Probability and Uncertainty, Transcriptome, Biotechnology, RESPONSES, Information Systems
Statistics and Probability, 570, Data Descriptor, DATABASE, Bioinformatics and Computational Biology, Library and Information Sciences, Microbiology, Education, Databases, Genetic, Databases, Genetic, Genetics, FUNCTIONAL GENOMICS, Animals, ECOSYSTEMS DAPHNIA, ADAPTATION, Science & Technology, Genome, Base Sequence, Prevention, Human Genome, Biology and Life Sciences, Biological Sciences, Corrigenda, Computer Science Applications, Multidisciplinary Sciences, MODEL, ALIGNMENT, Daphnia, Genetics, developmental biology, physiology, ZOOPLANKTON, MAP, Science & Technology - Other Topics, RNA, Gene-Environment Interaction, Statistics, Probability and Uncertainty, Transcriptome, Biotechnology, RESPONSES, Information Systems
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