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AbstractSARS-CoV-2 belongs to the family Coronaviridae which includes multiple human pathogens that have an outsized impact on aging populations. As a novel human pathogen, SARS-CoV-2 is undergoing continuous adaptation to this new host species and there is evidence of this throughout the scientific and public literature. However, most investigations of SARS-CoV-2 evolution have focused on large-scale collections of data across diverse populations and/or living environments. Here we investigate SARS-CoV-2 evolution in epidemiologically linked individuals within a single outbreak at a skilled nursing facility beginning with initial introduction of the pathogen. The data demonstrate that SARS-CoV-2 was introduced to the facility multiple times without establishing an interfacility transmission chain, followed by a single introduction that infected many individuals within a week. This large-scale introduction by a single genotype then persisted in the facility. SARS-CoV-2 sequences were investigated at both the consensus and intra-host variation levels. Understanding the variability in SARS-CoV-2 during transmission chains will assist in understanding the spread of this disease and can ultimately inform best practices for mitigation strategies.
570, SARS-CoV-2, Cell Phenomena, Science, Q, Medical Immunology, R, 610, COVID-19, Genetics and Genomics, Infectious Disease, Microbiology, Article, Disease Outbreaks, Cell and Developmental Biology, COVID-19 Testing, Medical Pathology, Virology, and Immunity, Medicine, Humans, Biological Phenomena, Skilled Nursing Facilities
570, SARS-CoV-2, Cell Phenomena, Science, Q, Medical Immunology, R, 610, COVID-19, Genetics and Genomics, Infectious Disease, Microbiology, Article, Disease Outbreaks, Cell and Developmental Biology, COVID-19 Testing, Medical Pathology, Virology, and Immunity, Medicine, Humans, Biological Phenomena, Skilled Nursing Facilities
citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 3 | |
popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Top 10% | |
influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |