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Nature Protocols
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Nature Protocols
Article . 2008 . Peer-reviewed
License: Springer TDM
Data sources: Crossref
Nature Protocols
Article . 2008
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Kinetic flux profiling for quantitation of cellular metabolic fluxes

Authors: Jie, Yuan; Bryson D, Bennett; Joshua D, Rabinowitz;

Kinetic flux profiling for quantitation of cellular metabolic fluxes

Abstract

This protocol enables quantitation of metabolic fluxes in cultured cells. Measurements are based on the kinetics of cellular incorporation of stable isotope from nutrient into downstream metabolites. At multiple time points, after cells are rapidly switched from unlabeled to isotope-labeled nutrient, metabolism is quenched, metabolites are extracted and the extract is analyzed by chromatography-mass spectrometry. Resulting plots of unlabeled compound versus time follow variants of exponential decay, with the flux equal to the decay rate multiplied by the intracellular metabolite concentration. Because labeling is typically fast (t(1/2)

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Keywords

Carbon Isotopes, Kinetics, Spectrometry, Mass, Electrospray Ionization, Tandem Mass Spectrometry, Cell Culture Techniques, Escherichia coli, Carbon, Chromatography, High Pressure Liquid

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    selected citations
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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
238
Top 1%
Top 1%
Top 10%
bronze