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Molecular Therapy
Article . 2016 . Peer-reviewed
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Molecular Therapy
Article
License: CC BY NC ND
Data sources: UnpayWall
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Structural Determinants of Sleeping Beauty Transposase Activity

Authors: Abrusán, György; Yant, Stephen R.; Szilágyi, András; Marsh, Joseph A.; Mátés, Lajos; Izsvák, Zsuzsanna; Barabas, Orsolya; +1 Authors

Structural Determinants of Sleeping Beauty Transposase Activity

Abstract

Transposases are important tools in genome engineering, and there is considerable interest in engineering more efficient ones. Here, we seek to understand the factors determining their activity using the Sleeping Beauty transposase. Recent work suggests that protein coevolutionary information can be used to classify groups of physically connected, coevolving residues into elements called "sectors", which have proven useful for understanding the folding, allosteric interactions, and enzymatic activity of proteins. Using extensive mutagenesis data, protein modeling and analysis of folding energies, we show that (i) The Sleeping Beauty transposase contains two sectors, which span across conserved domains, and are enriched in DNA-binding residues, indicating that the DNA binding and endonuclease functions of the transposase coevolve; (ii) Sector residues are highly sensitive to mutations, and most mutations of these residues strongly reduce transposition rate; (iii) Mutations with a strong effect on free energy of folding in the DDE domain of the transposase significantly reduce transposition rate. (iv) Mutations that influence DNA and protein-protein interactions generally reduce transposition rate, although most hyperactive mutants are also located on the protein surface, including residues with protein-protein interactions. This suggests that hyperactivity results from the modification of protein interactions, rather than the stabilization of protein fold.

Countries
Switzerland, United Kingdom, Hungary
Keywords

Models, Molecular, QH3015 Molecular biology / molekuláris biológia, Protein Conformation, Protein Stability, QH426 Genetics / genetika, Genetic Vectors, Transposases, Structure-Activity Relationship, Mutagenesis, Mutation, DNA Transposable Elements, Protein Interaction Domains and Motifs, Protein Multimerization, Carrier Proteins, Homologous Recombination, örökléstan, Conserved Sequence, Protein Binding

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
8
Top 10%
Average
Top 10%
Green
hybrid