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Journal of Investigative Dermatology
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A Subset of Methylated CpG Sites Differentiate Psoriatic from Normal Skin

Authors: Roberson, Elisha DO; Liu, Ying; Ryan, Caitriona; Joyce, Cailin E; Duan, Shenghui; Cao, Li; Martin, Ann; +3 Authors

A Subset of Methylated CpG Sites Differentiate Psoriatic from Normal Skin

Abstract

Psoriasis is a chronic inflammatory immune-mediated disorder affecting the skin and other organs including joints. Over 1,300 transcripts are altered in psoriatic involved skin compared with normal skin. However, to our knowledge, global epigenetic profiling of psoriatic skin is previously unreported. Here, we describe a genome-wide study of altered CpG methylation in psoriatic skin. We determined the methylation levels at 27,578 CpG sites in skin samples from individuals with psoriasis (12 involved, 8 uninvolved) and 10 unaffected individuals. CpG methylation of involved skin differed from normal skin at 1,108 sites. Twelve mapped to the epidermal differentiation complex, upstream or within genes that are highly upregulated in psoriasis. Hierarchical clustering of 50 of the top differentially methylated (DM) sites separated psoriatic from normal skin samples with uninvolved skin exhibiting intermediate methylation. CpG sites where methylation was correlated with gene expression are reported. Sites with inverse correlations between methylation and nearby gene expression include those of KYNU, OAS2, S100A12, and SERPINB3, whose strong transcriptional upregulation is an important discriminator of psoriasis. Pyrosequencing of bisulfite-treated DNA from skin biopsies at three DM loci confirmed earlier findings and revealed reversion of methylation levels toward the non-psoriatic state after 1 month of anti-TNF-α therapy.

Country
United States
Keywords

Adult, Male, Clinical Sciences, Oncology and Carcinogenesis, Anti-Inflammatory Agents, Dermatology, Antibodies, Monoclonal, Humanized, Autoimmune Disease, Biochemistry, Antibodies, Article, Rare Diseases, Clinical Research, Antigens, Neoplasm, Monoclonal, Genetics, Humans, Psoriasis, Antigens, Humanized, Molecular Biology, Serpins, Skin, Base Sequence, Prevention, Dermatology & Venereal Diseases, Gene Expression Profiling, Human Genome, S100 Proteins, S100A12 Protein, Adalimumab, DNA, Cell Biology, Sequence Analysis, DNA, DNA Methylation, Up-Regulation, Neoplasm, CpG Islands, Female, Sequence Analysis

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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    150
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
150
Top 1%
Top 10%
Top 1%
Green
hybrid