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British Journal of Cancer
Article . 2018 . Peer-reviewed
License: CC BY NC SA
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British Journal of Cancer
Article
License: CC BY NC SA
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PubMed Central
Article . 2018
License: CC BY NC SA
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A core matrisome gene signature predicts cancer outcome

Authors: Yuzhalin, A; Urbonas, T; Silva, M; Muschel, R; Gordon-Weeks, A;

A core matrisome gene signature predicts cancer outcome

Abstract

Accumulating evidence implicates the tumour stroma as an important determinant of cancer progression but the protein constituents relevant for this effect are unknown. Here we utilised a bioinformatics approach to identify an extracellular matrix (ECM) gene signature overexpressed in multiple cancer types and strongly predictive of adverse outcome.Gene expression levels in cancers were determined using Oncomine. Geneset enrichment analysis was performed using the Broad Institute desktop application. Survival analysis was performed using KM plotter. Survival data were generated from publically available genesets.We analysed ECM genes significantly upregulated across a large cohort of patients with ovarian, lung, gastric and colon cancers and defined a signature of nine commonly upregulated genes. Each of these nine genes was considerably overexpressed in all the cancers studied, and cumulatively, their expression was associated with poor prognosis across all data sets. Further, the gene signature expression was associated with enrichment of genes governing processes linked to poor prognosis, such as EMT, angiogenesis, hypoxia, and inflammation.Here we identify a nine-gene ECM signature, which strongly predicts outcome across multiple cancer types and can be used for prognostication after validation in prospective cancer cohorts.

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United Kingdom
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Keywords

Inflammation, Ovarian Neoplasms, Epithelial-Mesenchymal Transition, Lung Neoplasms, Esophageal Neoplasms, Neovascularization, Pathologic, Computational Biology, Gene Expression, Breast Neoplasms, Kaplan-Meier Estimate, Adenocarcinoma, Genetics & Genomics, Prognosis, Cell Hypoxia, Extracellular Matrix, Survival Rate, Stomach Neoplasms, Neoplasms, Colonic Neoplasms, Humans, Female

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    98
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
98
Top 1%
Top 10%
Top 1%
Green
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