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The Journal of Organic Chemistry
Article . 2010 . Peer-reviewed
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Intramolecular Cation−π Interactions As the Driving Force To Restrict the Conformation of Certain Nucleosides

Authors: Casanova, Elena; Priego, Eva María; Jimeno, M. Luisa; Aguado, Leire; Negri, Ana; Gago, Federico; Camarasa Rius, María José; +1 Authors

Intramolecular Cation−π Interactions As the Driving Force To Restrict the Conformation of Certain Nucleosides

Abstract

Despite the well-established importance of intermolecular cation-pi interactions in molecular recognition, intramolecular cation-pi interactions have been less studied. Here we describe how the simultaneous presence of an aromatic ring at the 5'-position of an inosine derivative and a positively charged imidazolium ring in the purine base drive the conformation of the nucleoside toward a very major conformer in solution that is stabilized by an intramolecular cation-pi interaction. Therefore, the cation-pi interaction between imidazolium ions and aromatic rings can also be proposed in the design of small molecules where this type of interaction is desirable. The imidazolium ion can be obtained by a simple acidification of the pH of the media. So a simple change in pH can shift the conformational equilibrium from a random to a restricted conformation stabilized by an intramolecular cation-pi interaction. Thus the here described nucleosides can be considered as a new class of pH-dependent conformationally switchable molecules.

Keywords

Magnetic Resonance Spectroscopy, Molecular Structure, Molecular Conformation, Quantum Theory, Nucleosides, RNA, Messenger, Hydrogen-Ion Concentration, Inosine

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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